DNA Damage Atlas

SRX5821820-HeLa_UT_N2_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045288


Source Project ID:   

SRP197975

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000097


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72147736087299835.2996-
chr19_gl000208_random06655128.4645+
chr2136085145360853653608515525.7606+
chr9_gl000199_random33768354343442725.4452+
chrUn_gl00022638957601569523.5502+
chr582811938828123888281194822.6693+
chr9_gl000199_random56445577415719021.0776-
rDNA12236157201277719.9756+
chrUn_gl0002260128720219.2874-
chrUn_gl0002165202823180317.0291+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72147736087299859.4172-
chr9_gl000199_random33872348893442748.2698+
chr19_gl000208_random06655134.3252+
chrUn_gl00021680081812518065132.4462+
chrUn_gl00022638957601569531.7067+
chrUn_gl00021611782601180328.064+
chrUn_gl000226059120227.914-
chr9_gl000199_random44095451974492823.5779+
rDNA12236157201277722.7358+
chrUn_gl00022811612011974111875121.6505-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab