DNA Damage Atlas

SRX5811013-GM13069_DSBC_0_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9033763


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

0.15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.841


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12211157681384737.6177+
chr9_gl000199_random33769353833450825.7016-
rDNA1232563172224.7758-
chrUn_gl00022637607736705923.8564-
rDNA27663296842859223.0288-
rDNA39431439484193822.4271+
chr9_gl000199_random71910741947299819.768-
chr9_gl000199_random56428579405711519.7402+
chrUn_gl000216560313299741519.2434-
chrUn_gl0002161155425187717.7917-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12211157681384753.4042+
rDNA1232563172240.2717-
rDNA27717296462859230.044-
chr9_gl000199_random33769351983450826.167-
chrUn_gl00022639517734705922.8353-
chr9_gl000199_random56660579405711520.9997+
chrUn_gl000226161913320.7635+
chrUn_gl00022012298912439612382020.1494+
chr9_gl000199_random72106740937299819.9644-
chrUn_gl00022012873513048012955919.642-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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