DNA Damage Atlas

SRX4905879-GM13069_DSBC_0_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078683


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

0.15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.8721


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12131160211293867.9388+
rDNA133234143453.3502+
rDNA26712304432722826.8489+
chrUn_gl00022013550713776013690522.6921-
chrUn_gl00021611056139151191622.3225-
chrUn_gl00022011746812057411879822.0707+
rDNA22022257832272920.4363+
chrUn_gl00022012290512602812382020.2877+
chrUn_gl00022012683913060112729918.4062+
chr9_gl000199_random56660579895718317.8017-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12211157681293853.4042+
rDNA1232563143440.2717+
chr9_gl000199_random33769351983443326.167+
chrUn_gl00022639517734672922.8353+
chr9_gl000199_random56660579405718320.9997-
chrUn_gl000226161911020.7635+
chrUn_gl00022012298912439612382020.1494+
chr9_gl000199_random72106740937299819.9644-
chrUn_gl00021240456414644141118.9327-
chrUn_gl00022013550713741513690518.9245-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab