DNA Damage Atlas

SRX4905878-GM13069_DSBC_UT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078684


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.782


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12052157701291962.9683+
rDNA63247153045.9731+
rDNA26722296182859225.6345-
rDNA35244441334022122.8164+
chrUn_gl00022013550413739113690521.4899-
chrUn_gl00022012862313051612955920.3153-
chr9_gl000199_random33760354003505419.9373-
chr9_gl000199_random56445577405703018.7344+
chrUn_gl00022011766312151512016018.7287-
chrUn_gl00022639247665702218.4135-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12340157701291964.0233+
rDNA27749295712859250.987-
rDNA432524153042.1133+
chrUn_gl00022013551413739113690525.8958-
chrUn_gl00022012870313050012955925.1412-
chr9_gl000199_random33786351883505422.4772-
chrUn_gl00022014166514342014298221.2466+
chrUn_gl00022011766312063112016020.1132-
chrUn_gl00022640017665702219.9623-
chr19_gl000208_random064633819.2815-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab