DNA Damage Atlas

SRX4905876-GM13069_DSBC_UT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078687


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.722


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA27749295712855767.3625+
rDNA12340159101277758.3207+
rDNA432524143437.6685+
chrUn_gl00022012291512428412382030.6763+
chrUn_gl00022013551413741213665129.0604+
chr2032815670328160163281600028.6343-
rDNA22227256692272926.1205+
chrUn_gl00021679963817618071026.071-
chrUn_gl00022012870313050012970624.9335-
chrUn_gl000216435321187223.7022-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12340157701277764.0233+
rDNA27749295712855750.987+
rDNA432524143442.1133+
chrUn_gl00022013551413739113665125.8958+
chrUn_gl00022012870313050012970625.1412-
chr9_gl000199_random33786351883505022.4772-
chrUn_gl00021679963817198071021.5617-
chrUn_gl00022014166514342014220421.2466-
chrUn_gl00022011766312063112013820.1132-
chrUn_gl00022640017665702219.9623-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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