DNA Damage Atlas


SRX14113746-HeLa-S3_cells_XR_64PP_UV_0_5h




Basic Information

Manual

Sample ID:   

SRR17957013


Source Project ID:   

PRJNA804872

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

10s


Treatment Dose:   

2J/m2


Harvested Time:   

repair time: 30min


Layout:   

SINGLE


Instrument model:   

Illumina NovaSeq 6000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1371314767141746.90178/
rDNA2844028766286026.24802/
chrUn_gl0002244155455143523.94953/
chrUn_gl00022635071923.60837/
chr81282305211282340851282314023.38823/
chr142081097320811842208114142.80432/
chr53226122632261901322615402.5326/
chr101295954691295965351295959812.45667/
chr71509727371509743331509738822.37013/
chrUn_gl00021610415618222.35113/
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab