DNA Damage Atlas


SRX11980458-PEM-seq_293T-CJ_RAG1-GFP-plus-RAG2




Basic Information

Manual

Sample ID:   

SRR15684119


Source Project ID:   

PRJNA758251

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with plasmids


Treatment Time:   

4 days


Genotype:   

DEL-CJ segment integration


Targeted break:   

RAG1 and RAG2


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1365955153659767436596553457493-
chr194104702341047435410472296844.98+
chr194110069541100940411007374174.22+
chr194112887741129080411288771526.62+
chr71057416941057418961057418951073.93-
chr19127793411277954212779341770.907+
chr19410845554108476441084563741.398+
chr17344239913442419334423991306.836+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab