DNA Damage Atlas

GSM4322061_Enterocyte_Neg_M1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119504


Source Project ID:   

GSE145598

Cell Type:   

Enterocyte


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Others:   

cell markers: Cd73/Nt5e negative


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007937


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638998521097310680474.082-
chrX143482538143483367143483075366.295-
chrUn_GL456396114631576311950121.177+
chrUn_GL45639018501198211952162.5351+
chrUn_GL45639017572182931771243.0421+
chr1344869346448705154486962242.7971+
chr649235929492368544923647434.1663+
chr614593230814593316714593275433.7365+
chrUn_GL45637086094032.4624+
chr220899543209006822090010730.9524+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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