DNA Damage Atlas

ERX5847552-ChIP_SSDS_DMC1_MUT_D

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

ERR6212450


Source Project ID:   

PRJEB43730

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Top6blΔ17Ct/Δ17Ct


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX36931900369328663693238460.8341+
chr633225257332257593322572558.5317-
chr888771558887718248877167350.21+
chrX12083166120836991208360145.1042-
chr1496953791969543119695402141.095+
chr1136642426366426883664267740.7813-
chr1784043352840436148404355340.7813-
chrX14126050014126076214126068640.7813-
chr1075970167597549759722140.0926+
chrX80144878015556801504739.9801+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX36932113369328383693238473.6875+
chrX16653619416653658416653642261.6424-
chr633225257332257463322572560.0877-
chr1611603896116042481160411353.1199-
chrX73018332730186987301863051.088+
chrX51838936518393065183907746.926-
chrX80144878015556801504739.9801+
chr390436665904373399043702339.6316+
chr614681093114681131914681097134.4223+
chr413642659413642703713642692133.1635+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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