Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format



FIMO - Motif search tool

FIMO version 5.5.2, (Release date: Sun Jan 29 10:33:12 2023 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa
Database contains 2000 sequences, 802000 residues

MOTIFS GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
1-TTTWWAAA 8 TTTATAAA
2-CCTCAGCCTCCCRAG 15 CCTCAGCCTCCCAAG
3-CCACCAYGCCCR 12 CCACCATGCCCA
4-GAGGTCAGGARTTC 14 GAGGTCAGGAGTTC
5-CCAGCCTGGSCAAC 14 CCAGCCTGGGCAAC
6-ACTAAAAATACAA 13 ACTAAAAATACAA
7-ACYCYGTCTCW 11 ACCCCGTCTCT
8-CTGTAATCCCAGC 13 CTGTAATCCCAGC
9-ACAGAAAACCAAA 13 ACAGAAAACCAAA
10-ACAAACCTGCACRTT 15 ACAAACCTGCACATT

Random model letter frequencies (GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background):
A 0.312 C 0.188 G 0.188 T 0.312


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
1-TTTWWAAA STREME-1 chr3 + 7101096 7101103 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 7101096 7101103 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 7129439 7129446 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 7129439 7129446 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 8119472 8119479 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 8119472 8119479 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 8144373 8144380 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr7 - 8144373 8144380 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 12856156 12856163 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 12856156 12856163 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 15263924 15263931 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr2 - 15263924 15263931 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 15331910 15331917 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 15331910 15331917 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 15544140 15544147 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 15544140 15544147 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 16187463 16187470 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 16187463 16187470 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 18880591 18880598 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 18880591 18880598 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 18880728 18880735 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 18880728 18880735 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 18893174 18893181 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 18893174 18893181 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 18959740 18959747 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 18959740 18959747 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 19210812 19210819 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 19210812 19210819 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 19211071 19211078 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 19211071 19211078 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 19439776 19439783 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr3 - 19439776 19439783 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chrX + 29004645 29004652 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chrX - 29004645 29004652 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr21 + 29109401 29109408 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr21 - 29109401 29109408 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr21 + 29109666 29109673 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr21 - 29109666 29109673 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr11 + 29170385 29170392 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr11 - 29170385 29170392 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr11 + 31448703 31448710 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr11 - 31448703 31448710 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 + 32115760 32115767 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 - 32115760 32115767 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 + 32219253 32219260 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 - 32219253 32219260 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 32984276 32984283 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr14 - 32984276 32984283 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 32984412 32984419 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr14 - 32984412 32984419 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 33723862 33723869 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 - 33723862 33723869 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 33903502 33903509 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 33903502 33903509 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 + 37220382 37220389 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 - 37220382 37220389 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 37289948 37289955 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr7 - 37289948 37289955 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 37747562 37747569 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 - 37747562 37747569 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 + 38216651 38216658 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 - 38216651 38216658 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 40117391 40117398 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 40117391 40117398 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 41511266 41511273 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr3 - 41511266 41511273 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 41695430 41695437 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 41695430 41695437 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 41767737 41767744 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 - 41767737 41767744 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 42757291 42757298 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 42757291 42757298 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr13 + 44141880 44141887 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr13 - 44141880 44141887 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 44293113 44293120 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 44293113 44293120 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 44496855 44496862 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr12 - 44496855 44496862 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 44720438 44720445 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr12 - 44720438 44720445 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 44963415 44963422 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 44963415 44963422 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 45837168 45837175 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 - 45837168 45837175 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 46012326 46012333 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 46012326 46012333 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 46061904 46061911 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 46061904 46061911 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 46753660 46753667 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 46753660 46753667 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 46861366 46861373 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 46861366 46861373 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 48839516 48839523 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 48839516 48839523 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr16 + 53952508 53952515 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr16 - 53952508 53952515 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 58012229 58012236 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 58012229 58012236 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 + 58504844 58504851 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 - 58504844 58504851 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 60013442 60013449 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 60013442 60013449 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 63477816 63477823 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 63477816 63477823 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 63572265 63572272 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 63572265 63572272 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 64919990 64919997 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 64919990 64919997 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 64934176 64934183 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr8 - 64934176 64934183 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 71362632 71362639 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 71362632 71362639 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr15 + 71856430 71856437 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr15 - 71856430 71856437 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 76157647 76157654 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr8 - 76157647 76157654 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 76157758 76157765 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr8 - 76157758 76157765 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 76637178 76637185 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 76637178 76637185 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 77387719 77387726 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr3 - 77387719 77387726 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr10 + 77553987 77553994 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr10 - 77553987 77553994 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 77607444 77607451 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 77607444 77607451 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 78059877 78059884 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 78059877 78059884 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 78897763 78897770 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 78897763 78897770 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 79688304 79688311 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr8 - 79688304 79688311 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 + 81260049 81260056 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr14 - 81260049 81260056 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 81743509 81743516 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 81743509 81743516 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 81797305 81797312 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 81797305 81797312 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr11 + 83608020 83608027 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr11 - 83608020 83608027 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 + 85466254 85466261 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr3 - 85466254 85466261 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 85939926 85939933 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 - 85939926 85939933 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 + 86072114 86072121 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 - 86072114 86072121 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr9 + 86231280 86231287 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr9 - 86231280 86231287 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 86729126 86729133 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 86729126 86729133 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 87076767 87076774 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 87076767 87076774 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 89029031 89029038 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 89029031 89029038 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 90079843 90079850 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 90079843 90079850 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 90286141 90286148 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 90286141 90286148 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 90536795 90536802 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 - 90536795 90536802 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 90548583 90548590 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 90548583 90548590 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 90548598 90548605 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 90548598 90548605 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 91966061 91966068 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 91966061 91966068 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 92125303 92125310 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 - 92125303 92125310 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr13 + 94368887 94368894 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr13 - 94368887 94368894 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr13 + 94644099 94644106 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr13 - 94644099 94644106 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr1 + 98353577 98353584 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr1 - 98353577 98353584 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr12 + 102712950 102712957 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr12 - 102712950 102712957 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 + 104747628 104747635 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 - 104747628 104747635 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 + 104808174 104808181 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 - 104808174 104808181 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr8 + 119819550 119819557 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr8 - 119819550 119819557 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 + 122259035 122259042 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr7 - 122259035 122259042 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 + 129091906 129091913 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr5 - 129091906 129091913 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 + 129281148 129281155 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr5 - 129281148 129281155 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 139012214 139012221 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 139012214 139012221 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 141534519 141534526 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr2 - 141534519 141534526 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 147476222 147476229 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr2 - 147476222 147476229 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 147476370 147476377 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 147476370 147476377 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr6 + 148380374 148380381 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr6 - 148380374 148380381 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr5 + 162815063 162815070 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr5 - 162815063 162815070 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 163282993 163283000 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 163282993 163283000 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr1 + 170930498 170930505 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr1 - 170930498 170930505 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 181555434 181555441 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 181555434 181555441 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 181613508 181613515 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 181613508 181613515 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr4 + 181718140 181718147 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr4 - 181718140 181718147 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr1 + 187354201 187354208 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr1 - 187354201 187354208 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 212705557 212705564 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 212705557 212705564 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 212822597 212822604 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 212822597 212822604 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 214577655 214577662 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr2 - 214577655 214577662 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 214604790 214604797 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 214604790 214604797 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 214634321 214634328 8.91e-05 0.625 tttataaa
1-TTTWWAAA STREME-1 chr2 - 214634321 214634328 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 + 230476154 230476161 8.91e-05 0.625 TTTATAAA
1-TTTWWAAA STREME-1 chr2 - 230476154 230476161 8.91e-05 0.625 TTTATAAA

DEBUGGING INFORMATION

Command line:

fimo --parse-genomic-coord --verbosity 1 --oc GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/fimo_out_4 --bgfile GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background --motif 1-TTTWWAAA GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa

Settings:

output_directory = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/fimo_out_4 MEME file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml sequence file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa
background file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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