Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.5.2, (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa
Database contains 2000 sequences, 802000 residues
MOTIFS GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1-TTTWWAAA | 8 | TTTATAAA |
2-CCTCAGCCTCCCRAG | 15 | CCTCAGCCTCCCAAG |
3-CCACCAYGCCCR | 12 | CCACCATGCCCA |
4-GAGGTCAGGARTTC | 14 | GAGGTCAGGAGTTC |
5-CCAGCCTGGSCAAC | 14 | CCAGCCTGGGCAAC |
6-ACTAAAAATACAA | 13 | ACTAAAAATACAA |
7-ACYCYGTCTCW | 11 | ACCCCGTCTCT |
8-CTGTAATCCCAGC | 13 | CTGTAATCCCAGC |
9-ACAGAAAACCAAA | 13 | ACAGAAAACCAAA |
10-ACAAACCTGCACRTT | 15 | ACAAACCTGCACATT |
Random model letter frequencies (GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background):
A 0.312 C 0.188 G 0.188 T 0.312
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
1-TTTWWAAA | STREME-1 | chr3 | + | 7101096 | 7101103 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 7101096 | 7101103 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 7129439 | 7129446 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 7129439 | 7129446 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 8119472 | 8119479 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 8119472 | 8119479 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 8144373 | 8144380 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr7 | - | 8144373 | 8144380 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 12856156 | 12856163 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 12856156 | 12856163 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 15263924 | 15263931 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr2 | - | 15263924 | 15263931 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 15331910 | 15331917 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 15331910 | 15331917 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 15544140 | 15544147 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 15544140 | 15544147 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 16187463 | 16187470 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 16187463 | 16187470 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 18880591 | 18880598 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 18880591 | 18880598 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 18880728 | 18880735 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 18880728 | 18880735 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 18893174 | 18893181 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 18893174 | 18893181 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 18959740 | 18959747 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 18959740 | 18959747 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 19210812 | 19210819 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 19210812 | 19210819 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 19211071 | 19211078 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 19211071 | 19211078 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 19439776 | 19439783 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr3 | - | 19439776 | 19439783 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chrX | + | 29004645 | 29004652 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chrX | - | 29004645 | 29004652 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr21 | + | 29109401 | 29109408 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr21 | - | 29109401 | 29109408 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr21 | + | 29109666 | 29109673 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr21 | - | 29109666 | 29109673 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr11 | + | 29170385 | 29170392 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr11 | - | 29170385 | 29170392 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr11 | + | 31448703 | 31448710 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr11 | - | 31448703 | 31448710 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | + | 32115760 | 32115767 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | - | 32115760 | 32115767 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | + | 32219253 | 32219260 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | - | 32219253 | 32219260 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 32984276 | 32984283 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr14 | - | 32984276 | 32984283 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 32984412 | 32984419 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr14 | - | 32984412 | 32984419 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 33723862 | 33723869 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | - | 33723862 | 33723869 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 33903502 | 33903509 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 33903502 | 33903509 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | + | 37220382 | 37220389 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | - | 37220382 | 37220389 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 37289948 | 37289955 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr7 | - | 37289948 | 37289955 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 37747562 | 37747569 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | - | 37747562 | 37747569 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | + | 38216651 | 38216658 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | - | 38216651 | 38216658 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 40117391 | 40117398 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 40117391 | 40117398 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 41511266 | 41511273 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr3 | - | 41511266 | 41511273 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 41695430 | 41695437 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 41695430 | 41695437 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 41767737 | 41767744 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | - | 41767737 | 41767744 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 42757291 | 42757298 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 42757291 | 42757298 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr13 | + | 44141880 | 44141887 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr13 | - | 44141880 | 44141887 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 44293113 | 44293120 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 44293113 | 44293120 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 44496855 | 44496862 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr12 | - | 44496855 | 44496862 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 44720438 | 44720445 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr12 | - | 44720438 | 44720445 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 44963415 | 44963422 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 44963415 | 44963422 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 45837168 | 45837175 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | - | 45837168 | 45837175 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 46012326 | 46012333 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 46012326 | 46012333 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 46061904 | 46061911 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 46061904 | 46061911 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 46753660 | 46753667 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 46753660 | 46753667 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 46861366 | 46861373 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 46861366 | 46861373 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 48839516 | 48839523 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 48839516 | 48839523 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr16 | + | 53952508 | 53952515 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr16 | - | 53952508 | 53952515 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 58012229 | 58012236 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 58012229 | 58012236 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | + | 58504844 | 58504851 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | - | 58504844 | 58504851 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 60013442 | 60013449 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 60013442 | 60013449 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 63477816 | 63477823 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 63477816 | 63477823 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 63572265 | 63572272 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 63572265 | 63572272 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 64919990 | 64919997 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 64919990 | 64919997 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 64934176 | 64934183 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr8 | - | 64934176 | 64934183 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 71362632 | 71362639 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 71362632 | 71362639 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr15 | + | 71856430 | 71856437 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr15 | - | 71856430 | 71856437 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 76157647 | 76157654 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr8 | - | 76157647 | 76157654 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 76157758 | 76157765 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr8 | - | 76157758 | 76157765 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 76637178 | 76637185 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 76637178 | 76637185 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 77387719 | 77387726 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr3 | - | 77387719 | 77387726 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr10 | + | 77553987 | 77553994 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr10 | - | 77553987 | 77553994 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 77607444 | 77607451 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 77607444 | 77607451 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 78059877 | 78059884 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 78059877 | 78059884 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 78897763 | 78897770 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 78897763 | 78897770 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 79688304 | 79688311 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr8 | - | 79688304 | 79688311 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | + | 81260049 | 81260056 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr14 | - | 81260049 | 81260056 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 81743509 | 81743516 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 81743509 | 81743516 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 81797305 | 81797312 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 81797305 | 81797312 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr11 | + | 83608020 | 83608027 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr11 | - | 83608020 | 83608027 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | + | 85466254 | 85466261 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr3 | - | 85466254 | 85466261 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 85939926 | 85939933 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | - | 85939926 | 85939933 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | + | 86072114 | 86072121 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | - | 86072114 | 86072121 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr9 | + | 86231280 | 86231287 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr9 | - | 86231280 | 86231287 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 86729126 | 86729133 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 86729126 | 86729133 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 87076767 | 87076774 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 87076767 | 87076774 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 89029031 | 89029038 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 89029031 | 89029038 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 90079843 | 90079850 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 90079843 | 90079850 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 90286141 | 90286148 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 90286141 | 90286148 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 90536795 | 90536802 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | - | 90536795 | 90536802 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 90548583 | 90548590 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 90548583 | 90548590 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 90548598 | 90548605 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 90548598 | 90548605 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 91966061 | 91966068 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 91966061 | 91966068 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 92125303 | 92125310 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | - | 92125303 | 92125310 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr13 | + | 94368887 | 94368894 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr13 | - | 94368887 | 94368894 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr13 | + | 94644099 | 94644106 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr13 | - | 94644099 | 94644106 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr1 | + | 98353577 | 98353584 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr1 | - | 98353577 | 98353584 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr12 | + | 102712950 | 102712957 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr12 | - | 102712950 | 102712957 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | + | 104747628 | 104747635 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | - | 104747628 | 104747635 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | + | 104808174 | 104808181 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | - | 104808174 | 104808181 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr8 | + | 119819550 | 119819557 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr8 | - | 119819550 | 119819557 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | + | 122259035 | 122259042 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr7 | - | 122259035 | 122259042 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | + | 129091906 | 129091913 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr5 | - | 129091906 | 129091913 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | + | 129281148 | 129281155 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr5 | - | 129281148 | 129281155 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 139012214 | 139012221 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 139012214 | 139012221 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 141534519 | 141534526 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr2 | - | 141534519 | 141534526 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 147476222 | 147476229 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr2 | - | 147476222 | 147476229 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 147476370 | 147476377 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 147476370 | 147476377 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr6 | + | 148380374 | 148380381 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr6 | - | 148380374 | 148380381 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr5 | + | 162815063 | 162815070 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr5 | - | 162815063 | 162815070 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 163282993 | 163283000 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 163282993 | 163283000 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr1 | + | 170930498 | 170930505 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr1 | - | 170930498 | 170930505 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 181555434 | 181555441 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 181555434 | 181555441 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 181613508 | 181613515 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 181613508 | 181613515 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr4 | + | 181718140 | 181718147 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr4 | - | 181718140 | 181718147 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr1 | + | 187354201 | 187354208 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr1 | - | 187354201 | 187354208 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 212705557 | 212705564 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 212705557 | 212705564 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 212822597 | 212822604 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 212822597 | 212822604 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 214577655 | 214577662 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr2 | - | 214577655 | 214577662 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 214604790 | 214604797 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 214604790 | 214604797 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 214634321 | 214634328 | 8.91e-05 | 0.625 | tttataaa |
1-TTTWWAAA | STREME-1 | chr2 | - | 214634321 | 214634328 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | + | 230476154 | 230476161 | 8.91e-05 | 0.625 | TTTATAAA |
1-TTTWWAAA | STREME-1 | chr2 | - | 230476154 | 230476161 | 8.91e-05 | 0.625 | TTTATAAA |
Command line:
fimo --parse-genomic-coord --verbosity 1 --oc GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/fimo_out_4 --bgfile GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background --motif 1-TTTWWAAA GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa
Settings:
output_directory = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/fimo_out_4 | MEME file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/streme_out/streme.xml | sequence file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/GSM5861450-MiDAS_H1299_plusBRCA2plusAPH.hg19.summits_200.fa |
background file name = GSM5861450-MiDAS_H1299_plusBRCA2plusAPH_meme-chip/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.