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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-AGAATTTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 S= 6.0e-005
 0.880854 0.003380 0.111357 0.004408
 0.112385 0.003380 0.879826 0.004408
 0.880854 0.003380 0.111357 0.004408
 0.772878 0.003380 0.003380 0.220362
 0.112385 0.003380 0.003380 0.880854
 0.004408 0.003380 0.111357 0.880854
 0.004408 0.003380 0.111357 0.880854
 0.004408 0.115568 0.111357 0.768667

MOTIF 2-CTAGCCTMAT STREME-2
letter-probability matrix: alength= 4 w= 10 nsites= 10 S= 6.0e-005
 0.004465 0.878288 0.112782 0.004465
 0.004465 0.222140 0.003424 0.769972
 0.769972 0.112782 0.112782 0.004465
 0.113823 0.222140 0.659572 0.004465
 0.113823 0.878288 0.003424 0.004465
 0.113823 0.768930 0.003424 0.113823
 0.223181 0.003424 0.112782 0.660614
 0.332539 0.659572 0.003424 0.004465
 0.769972 0.003424 0.003424 0.223181
 0.113823 0.003424 0.222140 0.660614

MOTIF 3-GTMAGGA STREME-3
letter-probability matrix: alength= 4 w= 7 nsites= 7 S= 1.5e-003
 0.005527 0.004238 0.984709 0.005527
 0.005527 0.004238 0.004238 0.985998
 0.569351 0.420885 0.004238 0.005527
 0.850635 0.004238 0.139600 0.005527
 0.298626 0.004238 0.691610 0.005527
 0.005527 0.004238 0.849346 0.140889
 0.985998 0.004238 0.004238 0.005527

MOTIF 4-ACTTAGTTCT STREME-4
letter-probability matrix: alength= 4 w= 10 nsites= 6 S= 5.4e-003
 0.983376 0.005031 0.005031 0.006562
 0.167275 0.660419 0.005031 0.167275
 0.006562 0.005031 0.165744 0.822663
 0.006562 0.165744 0.165744 0.661950
 0.822663 0.005031 0.005031 0.167275
 0.006562 0.005031 0.821132 0.167275
 0.167275 0.165744 0.005031 0.661950
 0.006562 0.005031 0.005031 0.983376
 0.167275 0.821132 0.005031 0.006562
 0.006562 0.165744 0.005031 0.822663

MOTIF 5-GAGGCCA STREME-5
letter-probability matrix: alength= 4 w= 7 nsites= 6 S= 5.4e-003
 0.006562 0.005031 0.981845 0.006562
 0.661950 0.005031 0.005031 0.327988
 0.167275 0.165744 0.660419 0.006562
 0.006562 0.005031 0.981845 0.006562
 0.006562 0.821132 0.165744 0.006562
 0.167275 0.821132 0.005031 0.006562
 0.983376 0.005031 0.005031 0.006562

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --verbosity 1 --oc GSM4252122_JH4_Rad21degron_IAA_b_rep3_meme-chip/streme_out -dna --p GSM4252122_JH4_Rad21degron_IAA_b_rep3_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000
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CPU:		bnode001.sibcb.ac.cn
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FINALTIME:	565.54 seconds
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