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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-GATCTACACTC STREME-1
letter-probability matrix: alength= 4 w= 11 nsites= 51 E= 1.5e+000
 0.236120 0.030017 0.703416 0.030447
 0.997058 0.000837 0.000837 0.001268
 0.030447 0.059197 0.000837 0.909519
 0.001268 0.967448 0.000837 0.030447
 0.030447 0.000837 0.000837 0.967878
 0.967878 0.000837 0.000837 0.030447
 0.001268 0.938268 0.000837 0.059627
 0.938698 0.000837 0.000837 0.059627
 0.030447 0.879815 0.000837 0.088900
 0.059627 0.088470 0.030017 0.821886
 0.030447 0.763003 0.059290 0.147260

MOTIF 2-AGAAGGAAAWTG STREME-2
letter-probability matrix: alength= 4 w= 12 nsites= 29 E= 1.5e+000
 0.843204 0.001097 0.001097 0.154602
 0.116367 0.077568 0.651464 0.154602
 0.919674 0.001097 0.077568 0.001661
 0.881439 0.001097 0.001097 0.116367
 0.039896 0.039332 0.919111 0.001661
 0.039896 0.001097 0.919111 0.039896
 0.881439 0.039332 0.001097 0.078131
 0.957910 0.001097 0.039332 0.001661
 0.843204 0.001097 0.077568 0.078131
 0.536954 0.115803 0.001097 0.346146
 0.192837 0.077568 0.001097 0.728498
 0.001661 0.077568 0.842640 0.078131

MOTIF 3-ATGACYARTRRGT STREME-3
letter-probability matrix: alength= 4 w= 13 nsites= 28 E= 3.0e+000
 0.995828 0.001187 0.001187 0.001797
 0.001797 0.001187 0.001187 0.995828
 0.001797 0.001187 0.953839 0.043177
 0.954449 0.001187 0.042567 0.001797
 0.125935 0.705564 0.042567 0.125935
 0.084556 0.540047 0.042567 0.332831
 0.954449 0.001187 0.001187 0.043177
 0.332831 0.001187 0.664185 0.001797
 0.043177 0.042567 0.166704 0.747553
 0.291584 0.042567 0.498536 0.167314
 0.539726 0.001187 0.457289 0.001797
 0.001797 0.249462 0.746943 0.001797
 0.125935 0.001187 0.042567 0.830311

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc GSM5221164-GLOE_HCT116_WT_24h_R2_meme-chip/streme_out -dna --p GSM5221164-GLOE_HCT116_WT_24h_R2_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000
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CPU:		fnode006.sibcb.ac.cn
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FINALTIME:	7.80 seconds
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